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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
UVM cis rs10935120 1 rs9851441 chr3:134315091 ANAPC13 chr3:134196547-134204865:- 0.47 7.13 2.35E-9 Height
UVM cis rs10935120 1 rs9854299 chr3:134206728 ANAPC13 chr3:134196547-134204865:- 0.47 7.01 3.68E-9 Height
UVM cis rs10935120 1 rs9856693 chr3:134306913 ANAPC13 chr3:134196547-134204865:- 0.45 6.73 1.03E-8 Height
UVM cis rs10935120 1 rs9863786 chr3:134247203 ANAPC13 chr3:134196547-134204865:- 0.46 6.87 6.1E-9 Height
UVM cis rs10935120 1 rs9864346 chr3:134312352 ANAPC13 chr3:134196547-134204865:- 0.45 6.73 1.03E-8 Height
UVM cis rs10935120 1 rs9864439 chr3:134298671 ANAPC13 chr3:134196547-134204865:- 0.45 6.73 1.03E-8 Height
UVM cis rs10935120 1 rs9869981 chr3:134248801 ANAPC13 chr3:134196547-134204865:- 0.46 6.87 6.1E-9 Height
UVM cis rs10935120 1 rs9871305 chr3:134213538 ANAPC13 chr3:134196547-134204865:- 0.47 6.95 4.49E-9 Height
UVM cis rs10935120 1 rs9876658 chr3:134179453 ANAPC13 chr3:134196547-134204865:- -0.47 -7.21 1.7E-9 Height
UVM cis rs9876781 1 rs9881491 chr3:48487911 TREX1 chr3:48501186-48509043:+ -0.4 -4.9 8.74E-6 Longevity
UVM cis rs10935120 1 rs9883753 chr3:134247231 ANAPC13 chr3:134196547-134204865:- 0.46 6.87 6.1E-9 Height
UVM cis rs9876781 1 rs9883759 chr3:48463618 TREX1 chr3:48501186-48509043:+ -0.39 -5.04 5.32E-6 Longevity
UVM cis rs9876781 1 rs9883927 chr3:48463711 TREX1 chr3:48501186-48509043:+ -0.4 -5.1 4.38E-6 Longevity
UVM cis rs10935120 1 rs9884031 chr3:134256500 ANAPC13 chr3:134196547-134204865:- 0.46 6.87 6.1E-9 Height
UVM cis rs9902453 1 rs9890205 chr17:28382704 EFCAB5 chr17:28256874-28435469:+ -0.4 -5.08 4.7E-6 Coffee consumption (cups per day)